Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00988.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:1339 original size:22 final size:22

Alignment explanation


    Indices: 1311--1352  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1301 CTATACAAGT

                   *       *      
       1311 AATATTACTTGAATAGTTATAA
          1 AATATTAATTGAATAATTATAA

                                
       1333 AATATTAATTGAATAATTAT
          1 AATATTAATTGAATAATTAT

       1353 GTCTCTTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43


Consensus pattern (22 bp):   
AATATTAATTGAATAATTATAA
Done.