Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00991.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2517
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24


Found at i:489 original size:3 final size:3

Alignment explanation


    Indices: 481--519  Score: 69
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        471 ACTCGCTATT

                                  *                            
        481 GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

        520 AATCATGTAG


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
GAA

Done.