Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01402.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1803
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:1374 original size:31 final size:31

Alignment explanation


    Indices: 1339--1401  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1329 GGTGTCTGAG

                                           
       1339 TCCCATCATGTGCAGTTGTCATGTGTGAGTT
          1 TCCCATCATGTGCAGTTGTCATGTGTGAGTT

                                           
       1370 TCCCATCATGTGCAGTTGTCATGTGTGAGTT
          1 TCCCATCATGTGCAGTTGTCATGTGTGAGTT

             
       1401 T
          1 T

       1402 TAGTCTAGTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.16, C:0.19, G:0.25, T:0.40


Consensus pattern (31 bp):   
TCCCATCATGTGCAGTTGTCATGTGTGAGTT
Done.