Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01002.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34


Found at i:1393 original size:34 final size:34

Alignment explanation


    Indices: 1350--1418  Score: 138
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1340 AATGCATTGT

                                              
       1350 GGGTTTTGCTATGTTGTTTCTTTCTATTTTTTAG
          1 GGGTTTTGCTATGTTGTTTCTTTCTATTTTTTAG

                                              
       1384 GGGTTTTGCTATGTTGTTTCTTTCTATTTTTTAG
          1 GGGTTTTGCTATGTTGTTTCTTTCTATTTTTTAG

             
       1418 G
          1 G

       1419 TTTACTTATT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.09, C:0.09, G:0.22, T:0.61


Consensus pattern (34 bp):   
GGGTTTTGCTATGTTGTTTCTTTCTATTTTTTAG
Done.