Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01404.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32


Found at i:1045 original size:13 final size:14

Alignment explanation


    Indices: 1027--1059  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       1017 ATTTTTTAAA

                   *      
       1027 TTTAAAACAAT-AT
          1 TTTAAAAAAATAAT

                          
       1040 TTTAAAAAAATAAT
          1 TTTAAAAAAATAAT

                  
       1054 TTTAAA
          1 TTTAAA

       1060 TTTTTTTATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13   10  0.56
  14    8  0.44

ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39


Consensus pattern (14 bp):   
TTTAAAAAAATAAT
Done.