Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01009.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1442
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:1242 original size:35 final size:35

Alignment explanation


    Indices: 1185--1258  Score: 123
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       1175 AGACTAAGAG

                                               
       1185 GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA
          1 GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA

                    *                           
       1220 GATTGAAGGCCATGGGGG-GTATGGAAAGTGATTCA
          1 GATTGAAGACCA-GGGGGAGTATGGAAAGTGATTCA

                
       1255 GATT
          1 GATT

       1259 CAAATTGAAG


Statistics
Matches: 37,  Mismatches: 1, Indels: 2
        0.93            0.03        0.05

Matches are distributed among these distances:
  35   32  0.86
  36    5  0.14

ACGTcount: A:0.31, C:0.08, G:0.38, T:0.23


Consensus pattern (35 bp):   
GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA
Done.