Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01009.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 588

Length: 981
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:781 original size:35 final size:35

Alignment explanation


    Indices: 724--797  Score: 123
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        714 AGACTAAGAG

                                               
        724 GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA
          1 GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA

                    *                           
        759 GATTGAAGGCCATGGGGG-GTATGGAAAGTGATTCA
          1 GATTGAAGACCA-GGGGGAGTATGGAAAGTGATTCA

                
        794 GATT
          1 GATT

        798 CAAATTGAAG


Statistics
Matches: 37,  Mismatches: 1, Indels: 2
        0.93            0.03        0.05

Matches are distributed among these distances:
  35   32  0.86
  36    5  0.14

ACGTcount: A:0.31, C:0.08, G:0.38, T:0.23


Consensus pattern (35 bp):   
GATTGAAGACCAGGGGGAGTATGGAAAGTGATTCA
Done.