Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01014.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1183
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29


Found at i:1020 original size:6 final size:6

Alignment explanation


    Indices: 1009--1058  Score: 82
    Period size: 6  Copynumber: 8.3  Consensus size: 6

        999 ATTTCTGTTA

                                                         *      *  
       1009 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATATAT ATATAT
          1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT

              
       1057 AT
          1 AT

       1059 GCTATTCGTT


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   43  1.00

ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38


Consensus pattern (6 bp):   
ATACAT

Done.