Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01406.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29


Found at i:1038 original size:43 final size:43

Alignment explanation


    Indices: 955--1039  Score: 134
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        945 TTTATCCTAG

                              *          * *           
        955 AAAAAGAATTTAAAAAGAGGAGAAGATAATCTTGGATTGTTGA
          1 AAAAAGAATTTAAAAAGAAGAGAAGATAAACATGGATTGTTGA

                                               *      
        998 AAAAAGAATTTAAAAAGAAGAGAAGATAAACATGGGTTGTTG
          1 AAAAAGAATTTAAAAAGAAGAGAAGATAAACATGGATTGTTG

       1040 GATTTACCTC


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  43   38  1.00

ACGTcount: A:0.51, C:0.02, G:0.24, T:0.24


Consensus pattern (43 bp):   
AAAAAGAATTTAAAAAGAAGAGAAGATAAACATGGATTGTTGA
Done.