Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01026.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3806
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:245 original size:29 final size:29

Alignment explanation


    Indices: 203--260  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        193 TAAATAAATT

                                         
        203 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

                                         
        232 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

        261 TCGGTTAATA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (29 bp):   
CTTTTTTGGAACTACATAGATCTATGGAA

Found at i:1438 original size:14 final size:14

Alignment explanation


    Indices: 1419--1446  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       1409 TATTTACCTT

                          
       1419 CGATCAATATTATC
          1 CGATCAATATTATC

                          
       1433 CGATCAATATTATC
          1 CGATCAATATTATC

       1447 TTTATCTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36


Consensus pattern (14 bp):   
CGATCAATATTATC

Found at i:2013 original size:23 final size:23

Alignment explanation


    Indices: 1987--2032  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1977 GGGATATTAG

                                   
       1987 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

                                   
       2010 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

       2033 TCAAAATATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (23 bp):   
ATATTGACTAGTTATATACGAAC
Done.