Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01041.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 284

Length: 474
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34


Found at i:406 original size:11 final size:11

Alignment explanation


    Indices: 379--412  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

        369 GACTTTTAAA

                       
        379 TTATTTTGGTT
          1 TTATTTTGGTT

                   *   
        390 TT-TTTTTGTT
          1 TTATTTTGGTT

                       
        400 TTATTTTGGTT
          1 TTATTTTGGTT

              
        411 TT
          1 TT

        413 GGTGTAAGCC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  10    9  0.45
  11   11  0.55

ACGTcount: A:0.06, C:0.00, G:0.15, T:0.79


Consensus pattern (11 bp):   
TTATTTTGGTT
Done.