Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01049.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3536
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26


Found at i:1594 original size:45 final size:45

Alignment explanation


    Indices: 1543--1717  Score: 226
    Period size: 45  Copynumber: 3.9  Consensus size: 45

       1533 CAAGTGGGTC

                                 **          *           
       1543 TATACCTGATGAGAGTCATTCTGAAAAGGCTGCTCAGCCAAAGAG
          1 TATACCTGATGAGAGTCATTCCAAAAAGGCTGCACAGCCAAAGAG

                       *          **                   *  
       1588 TATACCTGATGGGAGTCGA-TCTGAAAAGGCTGCACAGCCAAAAAG
          1 TATACCTGATGAGAGTC-ATTCCAAAAAGGCTGCACAGCCAAAGAG

                              *                  *      *
       1633 TATACCTGATGAGAGTCAATCCAAAAAGGCTGCACAGTCAAAGAC
          1 TATACCTGATGAGAGTCATTCCAAAAAGGCTGCACAGCCAAAGAG

               *         *                          
       1678 TATTCCTGATGAGGGTCATTCCAAAAAGGCTGCACAGCCA
          1 TATACCTGATGAGAGTCATTCCAAAAAGGCTGCACAGCCA

       1718 GAAAGGAAAG


Statistics
Matches: 115,  Mismatches: 13, Indels: 4
        0.87            0.10        0.03

Matches are distributed among these distances:
  44    1  0.01
  45  113  0.98
  46    1  0.01

ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20


Consensus pattern (45 bp):   
TATACCTGATGAGAGTCATTCCAAAAAGGCTGCACAGCCAAAGAG

Done.