Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01049.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3278
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25


Found at i:1458 original size:45 final size:44

Alignment explanation


    Indices: 1407--1541  Score: 189
    Period size: 45  Copynumber: 3.0  Consensus size: 44

       1397 CAAGTGGGTC

                                             *        *  
       1407 TATACCTGATGAGAGTCATTCTGAAAAGGCTGCTCAGCCAAAGAG
          1 TATACCTGATGAGAGTCA-TCTGAAAAGGCTGCACAGCCAAAAAG

                       *                                 
       1452 TATACCTGATGGGAGTCGATCTGAAAAGGCTGCACAGCCAAAAAG
          1 TATACCTGATGAGAGTC-ATCTGAAAAGGCTGCACAGCCAAAAAG

                                 **                 *    
       1497 TATACCTGATGAGAGTCAATCCAAAAAGGCTGCACAGCCAGAAAG
          1 TATACCTGATGAGAGTC-ATCTGAAAAGGCTGCACAGCCAAAAAG

       1542 GAAAGAGAGC


Statistics
Matches: 81,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  45   80  0.99
  46    1  0.01

ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19


Consensus pattern (44 bp):   
TATACCTGATGAGAGTCATCTGAAAAGGCTGCACAGCCAAAAAG
Done.