Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01052.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4263
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:3454 original size:16 final size:16

Alignment explanation


    Indices: 3433--3466  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3423 CCAAATCAAG

                  *   *     
       3433 TTGAGTTGGTTTGAGT
          1 TTGAGTCGGTATGAGT

                            
       3449 TTGAGTCGGTATGAGT
          1 TTGAGTCGGTATGAGT

              
       3465 TT
          1 TT

       3467 TATCAAGCCA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.15, C:0.03, G:0.35, T:0.47


Consensus pattern (16 bp):   
TTGAGTCGGTATGAGT
Done.