Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01063.P8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13045
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:8490 original size:28 final size:28

Alignment explanation


    Indices: 8451--8518  Score: 82
    Period size: 28  Copynumber: 2.4  Consensus size: 28

       8441 GAATTACCAA

                   *            *  *    
       8451 TTTTAAATATATATATTGTATTATGATT
          1 TTTTAAAAATATATATTGTAATACGATT

                          *  *          
       8479 TTTTAAAAATATATTTTTTAATACGATT
          1 TTTTAAAAATATATATTGTAATACGATT

                        
       8507 TTTTATAAAATA
          1 TTTTA-AAAATA

       8519 ATGACAGAAA


Statistics
Matches: 34,  Mismatches: 5, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  28   28  0.82
  29    6  0.18

ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54


Consensus pattern (28 bp):   
TTTTAAAAATATATATTGTAATACGATT

Done.