Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01065.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 355

Length: 593
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:418 original size:2 final size:2

Alignment explanation


    Indices: 411--438  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        401 GCCACCGGTA

                                                     
        411 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        439 TCATGATCCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.