Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01420.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27


Found at i:47 original size:8 final size:8

Alignment explanation


    Indices: 31--65  Score: 61
    Period size: 8  Copynumber: 4.4  Consensus size: 8

         21 TCACCTTCCT

                *   
         31 CTTCTATC
          1 CTTCCATC

                    
         39 CTTCCATC
          1 CTTCCATC

                    
         47 CTTCCATC
          1 CTTCCATC

                    
         55 CTTCCATC
          1 CTTCCATC

               
         63 CTT
          1 CTT

         66 GCACTCCTGA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   26  1.00

ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43


Consensus pattern (8 bp):   
CTTCCATC

Done.