Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01084.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2056
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35


Found at i:1202 original size:30 final size:30

Alignment explanation


    Indices: 1168--1227  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1158 ATAGGTGGGT

                                          
       1168 AAGTTTAAAGAATTGATTTTTTAGTCAAAC
          1 AAGTTTAAAGAATTGATTTTTTAGTCAAAC

                                   *      
       1198 AAGTTTAAAGAATTGATTTTTTATTCAAAC
          1 AAGTTTAAAGAATTGATTTTTTAGTCAAAC

       1228 CCTTGTTTGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42


Consensus pattern (30 bp):   
AAGTTTAAAGAATTGATTTTTTAGTCAAAC
Done.