Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01422.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38


Found at i:277 original size:141 final size:142

Alignment explanation


    Indices: 22--287  Score: 383
    Period size: 141  Copynumber: 1.9  Consensus size: 142

         12 TTCAAGTTTT

                                     *                         *            *
         22 ATTCAAGTTACTTCTCAAGTTTTTTTATAAAACTTTAAGTTCTTTATTTCCCTCTTTTGTAAATC
          1 ATTCAAGTTACTTCTCAAGTTTTTTCATAAAACTTTAAGTTCTTTATTTCCATCTTTTGTAAATA

                *          *    *   *             *    *      *              
         87 TTTCCTTTACTATTAGTTTCTTTCTGTAACCTTTCAACCGTCTGTCCTTCTTGTAATTGGAATAT
         66 TTTCATTTACTATTAATTTCCTTCCGTAACCTTTCAACAGTCTCTCCTTCCTGTAATTGGAATAT

                        
        152 TATTGAACTTTG
        131 TATTGAACTTTG

                                        *                *                   
        164 ATTCAAGTTACTTCTCAAGTTTTTTCA-GAAACTTTAAGTTCTTTCTTTCCATCTTTTGTAAATA
          1 ATTCAAGTTACTTCTCAAGTTTTTTCATAAAACTTTAAGTTCTTTATTTCCATCTTTTGTAAATA

                                         *          *                    
        228 TTTCATTTACTATTAATTTCCTTCCGTAATCTTTCAACTATTC-CTCCTTCCTGTAATTGG
         66 TTTCATTTACTATTAATTTCCTTCCGTAACCTTTCAAC-AGTCTCTCCTTCCTGTAATTGG

        288 TATTAGAGCT


Statistics
Matches: 109,  Mismatches: 14, Indels: 3
        0.87            0.11        0.02

Matches are distributed among these distances:
 141   81  0.74
 142   28  0.26

ACGTcount: A:0.23, C:0.20, G:0.08, T:0.49


Consensus pattern (142 bp):   
ATTCAAGTTACTTCTCAAGTTTTTTCATAAAACTTTAAGTTCTTTATTTCCATCTTTTGTAAATA
TTTCATTTACTATTAATTTCCTTCCGTAACCTTTCAACAGTCTCTCCTTCCTGTAATTGGAATAT
TATTGAACTTTG
Done.