Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01096.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8810
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:5989 original size:51 final size:50

Alignment explanation


    Indices: 5865--6109  Score: 246
    Period size: 49  Copynumber: 4.9  Consensus size: 50

       5855 TCTATTGTGA

                                       *     *       *        
       5865 GGTCACATGTGTAGTACTAAGTGCAGGTTACTACGTGTACCGGATAAC-T
          1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTT

               **                              *     *        
       5914 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
          1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTT

              * *  *                       *        *      **  
       5964 CGATTACGTGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAGAT-GGTT
          1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTT

                   *                   *      *                 
       6014 AGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTA-CAGGATAA-TT
          1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATAACTT

                *                  *        *  *          
       6064 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTCTGCGTACCAGATA
          1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA

       6110 GCCTTGTCTA


Statistics
Matches: 162,  Mismatches: 29, Indels: 10
        0.81            0.14        0.05

Matches are distributed among these distances:
  49   80  0.49
  50   44  0.27
  51   38  0.23

ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30


Consensus pattern (50 bp):   
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTT
Done.