Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01426.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 553

Length: 922
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29


Found at i:660 original size:34 final size:34

Alignment explanation


    Indices: 617--684  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        607 GAGTCCTAGT

                                              
        617 TGAGACTAGTTTCGACTTGCCCTTTCCCATAATA
          1 TGAGACTAGTTTCGACTTGCCCTTTCCCATAATA

                                              
        651 TGAGACTAGTTTCGACTTGCCCTTTCCCATAATA
          1 TGAGACTAGTTTCGACTTGCCCTTTCCCATAATA

        685 ATAATTTTCA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35


Consensus pattern (34 bp):   
TGAGACTAGTTTCGACTTGCCCTTTCCCATAATA
Done.