Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01119.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1697
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34


Found at i:1580 original size:23 final size:23

Alignment explanation


    Indices: 1554--1598  Score: 90
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1544 CTTTTCCTAA

                                   
       1554 GAGCATTATTTTTCTTGCAGTTC
          1 GAGCATTATTTTTCTTGCAGTTC

                                  
       1577 GAGCATTATTTTTCTTGCAGTT
          1 GAGCATTATTTTTCTTGCAGTT

       1599 ACCTTGGAAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.18, C:0.16, G:0.18, T:0.49


Consensus pattern (23 bp):   
GAGCATTATTTTTCTTGCAGTTC
Done.