Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01128.F16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4208
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35


Found at i:872 original size:22 final size:22

Alignment explanation


    Indices: 803--886  Score: 77
    Period size: 22  Copynumber: 3.9  Consensus size: 22

        793 TATATACTAT

                                    
        803 TTTG-TCTTTTAAACAGTAATTTA
          1 TTTGATCTTTTAAACA-T-ATTTA

             *         **         
        826 TCTGATCTTTTCTACATA---A
          1 TTTGATCTTTTAAACATATTTA

                                  
        845 TTTGATCTTTTAAACATATTTA
          1 TTTGATCTTTTAAACATATTTA

                       **       
        867 TTTGATCTTTTCTACATATT
          1 TTTGATCTTTTAAACATATT

        887 AAGTCACTTA


Statistics
Matches: 49,  Mismatches: 8, Indels: 9
        0.74            0.12        0.14

Matches are distributed among these distances:
  19   16  0.33
  22   20  0.41
  23    4  0.08
  24    9  0.18

ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54


Consensus pattern (22 bp):   
TTTGATCTTTTAAACATATTTA

Found at i:873 original size:41 final size:42

Alignment explanation


    Indices: 803--884  Score: 132
    Period size: 41  Copynumber: 2.0  Consensus size: 42

        793 TATATACTAT

                                                      
        803 TTTGTCTTTTAAACAGTAATTTATCTGATCTTTTCTACATAA
          1 TTTGTCTTTTAAACAGTAATTTATCTGATCTTTTCTACATAA

                                     *                
        845 TTTGATCTTTTAAACA-T-ATTTATTTGATCTTTTCTACATA
          1 TTTG-TCTTTTAAACAGTAATTTATCTGATCTTTTCTACATA

        885 TTAAGTCACT


Statistics
Matches: 38,  Mismatches: 1, Indels: 3
        0.90            0.02        0.07

Matches are distributed among these distances:
  41   22  0.58
  42    5  0.13
  43   11  0.29

ACGTcount: A:0.28, C:0.13, G:0.06, T:0.52


Consensus pattern (42 bp):   
TTTGTCTTTTAAACAGTAATTTATCTGATCTTTTCTACATAA
Done.