Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01130.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4182
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:12 original size:2 final size:2

Alignment explanation


    Indices: 6--40  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

          1 AAAAT

                      *                                         
          6 AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

         41 TCTGAATTCT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.51, C:0.03, G:0.46, T:0.00


Consensus pattern (2 bp):   
AG

Done.