Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01141.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10016
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:6035 original size:130 final size:130

Alignment explanation


    Indices: 5801--6065  Score: 521
    Period size: 130  Copynumber: 2.0  Consensus size: 130

       5791 TTTTGAATCT

                                                                             
       5801 GATCTTGATTTCCTTATTTCCAAAAGGAAAGGAGTGAGGAGTTGTGTTAAATATCCTTCGTCTAA
          1 GATCTTGATTTCCTTATTTCCAAAAGGAAAGGAGTGAGGAGTTGTGTTAAATATCCTTCGTCTAA

                                                                             
       5866 TTTTGTTTCTTACAAAAATTTGTCACCTGTTTTTCTGCTTTTATCTCACAATTAACTATTGTTGA
         66 TTTTGTTTCTTACAAAAATTTGTCACCTGTTTTTCTGCTTTTATCTCACAATTAACTATTGTTGA

                                                                             
       5931 GATCTTGATTTCCTTATTTCCAAAAGGAAAGGAGTGAGGAGTTGTGTTAAATATCCTTCGTCTAA
          1 GATCTTGATTTCCTTATTTCCAAAAGGAAAGGAGTGAGGAGTTGTGTTAAATATCCTTCGTCTAA

                                              *                              
       5996 TTTTGTTTCTTACAAAAATTTGTCACCTGTTTTTTTGCTTTTATCTCACAATTAACTATTGTTGA
         66 TTTTGTTTCTTACAAAAATTTGTCACCTGTTTTTCTGCTTTTATCTCACAATTAACTATTGTTGA

                 
       6061 GATCT
          1 GATCT

       6066 CTAAGGATAT


Statistics
Matches: 134,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 130  134  1.00

ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43


Consensus pattern (130 bp):   
GATCTTGATTTCCTTATTTCCAAAAGGAAAGGAGTGAGGAGTTGTGTTAAATATCCTTCGTCTAA
TTTTGTTTCTTACAAAAATTTGTCACCTGTTTTTCTGCTTTTATCTCACAATTAACTATTGTTGA

Done.