Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01155.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1373
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34


Found at i:1229 original size:11 final size:11

Alignment explanation


    Indices: 1213--1237  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1203 AGATTGATAA

                       
       1213 AGACTATATAT
          1 AGACTATATAT

                       
       1224 AGACTATATAT
          1 AGACTATATAT

               
       1235 AGA
          1 AGA

       1238 TTGATAAAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32


Consensus pattern (11 bp):   
AGACTATATAT
Done.