Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01167.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1873
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:1194 original size:35 final size:35

Alignment explanation


    Indices: 1148--1216  Score: 104
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       1138 TCTGAGGATG

                           *                    
       1148 GTCCCTGTACTTATCTATTTGT-CTGGATTTAGTCT
          1 GTCCCTGTACTTATCGATTTGTGC-GGATTTAGTCT

                          *                   
       1183 GTCCCTGTACTTATGGATTTGTGCGGATTTAGTC
          1 GTCCCTGTACTTATCGATTTGTGCGGATTTAGTC

       1217 CTCTACTTTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  35   30  0.97
  36    1  0.03

ACGTcount: A:0.14, C:0.19, G:0.22, T:0.45


Consensus pattern (35 bp):   
GTCCCTGTACTTATCGATTTGTGCGGATTTAGTCT
Done.