Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01190.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2060
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31


Found at i:239 original size:7 final size:6

Alignment explanation


    Indices: 212--252  Score: 50
    Period size: 6  Copynumber: 7.0  Consensus size: 6

        202 TCAAACTTAA

                                                *            
        212 CTTTTT C-TTTT CTTTTT -TTTTT CCTTTTT GTTTTT CTTTTT
          1 CTTTTT CTTTTT CTTTTT CTTTTT -CTTTTT CTTTTT CTTTTT

        253 ATGGCTGCCA


Statistics
Matches: 30,  Mismatches: 2, Indels: 6
        0.79            0.05        0.16

Matches are distributed among these distances:
   5   10  0.33
   6   15  0.50
   7    5  0.17

ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83


Consensus pattern (6 bp):   
CTTTTT
Done.