Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01194.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3353
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34


Found at i:3256 original size:12 final size:12

Alignment explanation


    Indices: 3239--3263  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       3229 TGCTTTTGTG

                        
       3239 AGTTCAAATTAT
          1 AGTTCAAATTAT

                        
       3251 AGTTCAAATTAT
          1 AGTTCAAATTAT

             
       3263 A
          1 A

       3264 TTTTTTTAGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40


Consensus pattern (12 bp):   
AGTTCAAATTAT
Done.