Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01204.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4043
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34


Found at i:108 original size:2 final size:2

Alignment explanation


    Indices: 101--133  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

         91 CGGTTTCCGC

                                                             
        101 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

        134 AGGGGGGGGG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:3870 original size:8 final size:8

Alignment explanation


    Indices: 3859--3884  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       3849 GATTGATTGA

                    
       3859 TAGATAGG
          1 TAGATAGG

                    
       3867 TAGATAGG
          1 TAGATAGG

                    
       3875 TAGATAGG
          1 TAGATAGG

              
       3883 TA
          1 TA

       3885 TTTGATGTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27


Consensus pattern (8 bp):   
TAGATAGG
Done.