Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01212.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1779
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36


Found at i:1319 original size:40 final size:40

Alignment explanation


    Indices: 1264--1343  Score: 124
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1254 AAAGAAGGAT

                  *   *      *                      
       1264 CTCCGTGCTGTAATGCTGAAACGTCATTTTGCAGACACTA
          1 CTCCGTACTGCAATGCTAAAACGTCATTTTGCAGACACTA

                                 *                  
       1304 CTCCGTACTGCAATGCTAAAATGTCATTTTGCAGACACTA
          1 CTCCGTACTGCAATGCTAAAACGTCATTTTGCAGACACTA

       1344 TTCTAAAAGC


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  40   36  1.00

ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30


Consensus pattern (40 bp):   
CTCCGTACTGCAATGCTAAAACGTCATTTTGCAGACACTA
Done.