Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01214.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2042
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:1997 original size:79 final size:79

Alignment explanation


    Indices: 1866--2024  Score: 300
    Period size: 79  Copynumber: 2.0  Consensus size: 79

       1856 ATGAAAGATC

                                          *                                  
       1866 GTCCTATTTTTATGATGCTTTTATTGGTCTTGCATTGTATCTTTTACACTTTACATTCAAGCTAA
          1 GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA

                          
       1931 AAATGAATATGAAA
         66 AAATGAATATGAAA

                                      *                                      
       1945 GTCCTATTTTTATGATGCTTTTATTGTTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
          1 GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA

                          
       2010 AAATGAATATGAAA
         66 AAATGAATATGAAA

             
       2024 G
          1 G

       2025 AGACATCGAT


Statistics
Matches: 78,  Mismatches: 2, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  79   78  1.00

ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44


Consensus pattern (79 bp):   
GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
AAATGAATATGAAA
Done.