Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01215.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2039
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:243 original size:12 final size:12

Alignment explanation


    Indices: 226--251  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        216 TTTTCCGTTG

                        
        226 TTTTGTTTTTTC
          1 TTTTGTTTTTTC

                        
        238 TTTTGTTTTTTC
          1 TTTTGTTTTTTC

              
        250 TT
          1 TT

        252 GGCCTTCTTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.08, G:0.08, T:0.85


Consensus pattern (12 bp):   
TTTTGTTTTTTC

Found at i:1933 original size:2 final size:2

Alignment explanation


    Indices: 1928--1959  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1918 TAATATATAT

                                                           
       1928 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       1960 TAAGCAGCTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.