Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01223.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4074
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:775 original size:21 final size:21

Alignment explanation


    Indices: 745--797  Score: 88
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        735 TCTACAGCCA

                 *               
        745 CTGTTATTCCTGTTTTGGAAC
          1 CTGTTTTTCCTGTTTTGGAAC

            *                    
        766 TTGTTTTTCCTGTTTTGGAAC
          1 CTGTTTTTCCTGTTTTGGAAC

                       
        787 CTGTTTTTCCT
          1 CTGTTTTTCCT

        798 ATCTCCACTG


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.09, C:0.19, G:0.17, T:0.55


Consensus pattern (21 bp):   
CTGTTTTTCCTGTTTTGGAAC
Done.