Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01224.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9048
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33


Found at i:5749 original size:21 final size:21

Alignment explanation


    Indices: 5719--5771  Score: 88
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       5709 TCTACAGCCA

                 *               
       5719 CTGTTATTCCTGTTTTGGAAC
          1 CTGTTTTTCCTGTTTTGGAAC

            *                    
       5740 TTGTTTTTCCTGTTTTGGAAC
          1 CTGTTTTTCCTGTTTTGGAAC

                       
       5761 CTGTTTTTCCT
          1 CTGTTTTTCCT

       5772 ATCTCCACTG


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.09, C:0.19, G:0.17, T:0.55


Consensus pattern (21 bp):   
CTGTTTTTCCTGTTTTGGAAC
Done.