Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01228.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6291
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28


Found at i:2029 original size:13 final size:14

Alignment explanation


    Indices: 2011--2042  Score: 57
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       2001 CAATCCATTG

                          
       2011 AAAGAGAAAAA-AA
          1 AAAGAGAAAAATAA

                          
       2024 AAAGAGAAAAATAA
          1 AAAGAGAAAAATAA

                 
       2038 AAAGA
          1 AAAGA

       2043 ATGAAAAGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   11  0.61
  14    7  0.39

ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03


Consensus pattern (14 bp):   
AAAGAGAAAAATAA

Done.