Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01234.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:734 original size:16 final size:16

Alignment explanation


    Indices: 713--744  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        703 GGCAATCCGT

                            
        713 GAGTAACTATGAAAGC
          1 GAGTAACTATGAAAGC

                            
        729 GAGTAACTATGAAAGC
          1 GAGTAACTATGAAAGC

        745 TGTTGCCATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19


Consensus pattern (16 bp):   
GAGTAACTATGAAAGC
Done.