Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01268.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4240
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:3473 original size:34 final size:34

Alignment explanation


    Indices: 3434--3502  Score: 129
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3424 TCAATAAGAC

                                        *     
       3434 ACCCAAGCCAATGGAAAGGCAGTTGATGGGTCTT
          1 ACCCAAGCCAATGGAAAGGCAGTTGATGAGTCTT

                                              
       3468 ACCCAAGCCAATGGAAAGGCAGTTGATGAGTCTT
          1 ACCCAAGCCAATGGAAAGGCAGTTGATGAGTCTT

             
       3502 A
          1 A

       3503 GGCGGAGAAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20


Consensus pattern (34 bp):   
ACCCAAGCCAATGGAAAGGCAGTTGATGAGTCTT
Done.