Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01286.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2187
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37


Found at i:1840 original size:20 final size:20

Alignment explanation


    Indices: 1817--1855  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1807 TATCGATACT

                *    *          
       1817 TTTCTTAAGTTATCAATATA
          1 TTTCCTAAGGTATCAATATA

                         *     
       1837 TTTCCTAAGGTATTAATAT
          1 TTTCCTAAGGTATCAATAT

       1856 TCCTGCTCCA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49


Consensus pattern (20 bp):   
TTTCCTAAGGTATCAATATA
Done.