Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01301.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2578
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39


Found at i:2257 original size:29 final size:30

Alignment explanation


    Indices: 2218--2279  Score: 117
    Period size: 29  Copynumber: 2.1  Consensus size: 30

       2208 GAGTCTGGAT

                                          
       2218 TTCAGCAATTTTTTAATGTAGTCAATGTTA
          1 TTCAGCAATTTTTTAATGTAGTCAATGTTA

                                          
       2248 TTCAG-AATTTTTTAATGTAGTCAATGTTA
          1 TTCAGCAATTTTTTAATGTAGTCAATGTTA

               
       2277 TTC
          1 TTC

       2280 CGGTATAAAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  29   27  0.84
  30    5  0.16

ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48


Consensus pattern (30 bp):   
TTCAGCAATTTTTTAATGTAGTCAATGTTA
Done.