Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01303.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7857
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:6085 original size:7 final size:7

Alignment explanation


    Indices: 6073--6149  Score: 127
    Period size: 7  Copynumber: 11.0  Consensus size: 7

       6063 TGCTATGACA

                   
       6073 GGCAAGG
          1 GGCAAGG

                   
       6080 GGCAAGG
          1 GGCAAGG

                   
       6087 GGCAAGG
          1 GGCAAGG

            *      
       6094 AGCAAGG
          1 GGCAAGG

                   
       6101 GGCAAGG
          1 GGCAAGG

            *      
       6108 AGCAAGG
          1 GGCAAGG

            *      
       6115 AGCAAGG
          1 GGCAAGG

                   
       6122 GGCAAGG
          1 GGCAAGG

                   
       6129 GGCAAGG
          1 GGCAAGG

                   
       6136 GGCAAGG
          1 GGCAAGG

                   
       6143 GGCAAGG
          1 GGCAAGG

       6150 CTTTTTGAAC


Statistics
Matches: 66,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   7   66  1.00

ACGTcount: A:0.32, C:0.14, G:0.53, T:0.00


Consensus pattern (7 bp):   
GGCAAGG

Done.