Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01303.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5480
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:5079 original size:7 final size:7

Alignment explanation


    Indices: 5067--5143  Score: 127
    Period size: 7  Copynumber: 11.0  Consensus size: 7

       5057 TGCTATGACA

                   
       5067 GGCAAGG
          1 GGCAAGG

                   
       5074 GGCAAGG
          1 GGCAAGG

                   
       5081 GGCAAGG
          1 GGCAAGG

            *      
       5088 AGCAAGG
          1 GGCAAGG

                   
       5095 GGCAAGG
          1 GGCAAGG

            *      
       5102 AGCAAGG
          1 GGCAAGG

            *      
       5109 AGCAAGG
          1 GGCAAGG

                   
       5116 GGCAAGG
          1 GGCAAGG

                   
       5123 GGCAAGG
          1 GGCAAGG

                   
       5130 GGCAAGG
          1 GGCAAGG

                   
       5137 GGCAAGG
          1 GGCAAGG

       5144 CTTTTTGAAC


Statistics
Matches: 66,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   7   66  1.00

ACGTcount: A:0.32, C:0.14, G:0.53, T:0.00


Consensus pattern (7 bp):   
GGCAAGG

Done.