Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01316.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 292

Length: 488
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:135 original size:26 final size:26

Alignment explanation


    Indices: 105--157  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

         95 ATCTCTCAAG

                                      
        105 GATTCTTCTTCTTGGTGTTCCTCTAA
          1 GATTCTTCTTCTTGGTGTTCCTCTAA

                                      
        131 GATTCTTCTTCTTGGTGTTCCTCTAA
          1 GATTCTTCTTCTTGGTGTTCCTCTAA

             
        157 G
          1 G

        158 CAAGCAAGGC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49


Consensus pattern (26 bp):   
GATTCTTCTTCTTGGTGTTCCTCTAA

Done.