Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01452.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2533
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30


Found at i:1484 original size:17 final size:17

Alignment explanation


    Indices: 1458--1490  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1448 TGCTATTTCG

                             
       1458 TCTTTCTCAGGCAAAGC
          1 TCTTTCTCAGGCAAAGC

                 *          
       1475 TCTTTTTCAGGCAAAG
          1 TCTTTCTCAGGCAAAG

       1491 AAGAACCTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33


Consensus pattern (17 bp):   
TCTTTCTCAGGCAAAGC
Done.