Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01330.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5103
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35


Found at i:1855 original size:39 final size:39

Alignment explanation


    Indices: 1810--2078  Score: 412
    Period size: 39  Copynumber: 6.9  Consensus size: 39

       1800 ATGCAAGACA

                          *            *           
       1810 CTGGAAATGTATCCAGGCTAAAGTCCCACAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                    *         *           *        
       1849 CTGGAAATATATCCGGGCCAAAGTCCCGCAAGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                                                   
       1888 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

               *              *       *            
       1927 CTGAAAATGTATCCGGGCCAAAGTCCTGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                                                   
       1966 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

                              *                    
       2005 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

             *      *     *  *      *          
       2044 CGGGAAATCTATCCAGGTTAAAGTACCGCAGGCTT
          1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT

       2079 TGTACTGGTA


Statistics
Matches: 209,  Mismatches: 21, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  39  209  1.00

ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22


Consensus pattern (39 bp):   
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG

Done.