Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01336.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4073
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:3610 original size:40 final size:40

Alignment explanation


    Indices: 3565--3694  Score: 156
    Period size: 40  Copynumber: 3.2  Consensus size: 40

       3555 CGGAATACAA

                                                     
       3565 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
          1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC

                   *  **   *                        
       3605 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
          1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC

                  *  *      *                      * 
       3645 CCGGATGTAGCCACTAACAC-AATTGCCTTCGGGTCTTAAC
          1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC

                      
       3685 CCGGATATAA
          1 CCGGATATAA

       3695 TTTCCAGCAT


Statistics
Matches: 75,  Mismatches: 13, Indels: 4
        0.82            0.14        0.04

Matches are distributed among these distances:
  39    3  0.04
  40   72  0.96

ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23


Consensus pattern (40 bp):   
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Done.