Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01343.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 274

Length: 457
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31


Found at i:254 original size:68 final size:68

Alignment explanation


    Indices: 152--287  Score: 272
    Period size: 68  Copynumber: 2.0  Consensus size: 68

        142 TGGTATCGAG

                                                                             
        152 AGTTCCAGGTTAGCTCGGGTTGGAGGCCGTCAGAGATATTATCACCCTATCGAGTTAACGTTATC
          1 AGTTCCAGGTTAGCTCGGGTTGGAGGCCGTCAGAGATATTATCACCCTATCGAGTTAACGTTATC

               
        217 GGA
         66 GGA

                                                                             
        220 AGTTCCAGGTTAGCTCGGGTTGGAGGCCGTCAGAGATATTATCACCCTATCGAGTTAACGTTATC
          1 AGTTCCAGGTTAGCTCGGGTTGGAGGCCGTCAGAGATATTATCACCCTATCGAGTTAACGTTATC

               
        285 GGA
         66 GGA

        288 GTAAGTAAAC


Statistics
Matches: 68,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  68   68  1.00

ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28


Consensus pattern (68 bp):   
AGTTCCAGGTTAGCTCGGGTTGGAGGCCGTCAGAGATATTATCACCCTATCGAGTTAACGTTATC
GGA
Done.