Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01345.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2795
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33


Found at i:2296 original size:22 final size:24

Alignment explanation


    Indices: 2267--2323  Score: 66
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       2257 CAAACAAGTC

                                    
       2267 TTCCCTTCTTCA-CTGCTC-CT-T
          1 TTCCCTTCTTCATCTGCTCTCTCT

                     *      *        
       2288 TCTCCCTTCATCATCTTCTCTCTCT
          1 T-TCCCTTCTTCATCTGCTCTCTCT

                       
       2313 TTCCCTTCTTC
          1 TTCCCTTCTTC

       2324 CTTTTCAGGT


Statistics
Matches: 29,  Mismatches: 3, Indels: 5
        0.78            0.08        0.14

Matches are distributed among these distances:
  21    1  0.03
  22   10  0.34
  23    5  0.17
  24   11  0.38
  25    2  0.07

ACGTcount: A:0.05, C:0.44, G:0.02, T:0.49


Consensus pattern (24 bp):   
TTCCCTTCTTCATCTGCTCTCTCT
Done.