Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01365.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 462

Length: 770
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:420 original size:18 final size:17

Alignment explanation


    Indices: 399--444  Score: 58
    Period size: 16  Copynumber: 2.7  Consensus size: 17

        389 TTTATGAGTT

                        *     
        399 AAAAAAAAAAGATAAAGA
          1 AAAAAAAAAAGAGAAA-A

                  *          
        417 AAAAAACAAAG-GAAAA
          1 AAAAAAAAAAGAGAAAA

                        
        433 AAAAAAAAAAGA
          1 AAAAAAAAAAGA

        445 AAGTGAGCCA


Statistics
Matches: 24,  Mismatches: 3, Indels: 3
        0.80            0.10        0.10

Matches are distributed among these distances:
  16   11  0.46
  17    3  0.12
  18   10  0.42

ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02


Consensus pattern (17 bp):   
AAAAAAAAAAGAGAAAA
Done.