Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01369.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:1593 original size:18 final size:19

Alignment explanation


    Indices: 1566--1601  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

       1556 TGTTTTCACC

                 *             
       1566 TTTTTTCTTTTTC-TTTCA
          1 TTTTTGCTTTTTCATTTCA

                              
       1584 TTTTTGCTTTTTCATTTC
          1 TTTTTGCTTTTTCATTTC

       1602 CAGCAAGCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   12  0.75
  19    4  0.25

ACGTcount: A:0.06, C:0.17, G:0.03, T:0.75


Consensus pattern (19 bp):   
TTTTTGCTTTTTCATTTCA

Done.